同济大学ADMIS实验室 Tongji ADMIS Lab

Publications

Highlighted

Effective Cloud Removal for Remote Sensing Images by an Improved Mean-Reverting Denoising Model with Elucidated Design Space
Effective Cloud Removal for Remote Sensing Images by an Improved Mean-Reverting Denoising Model with Elucidated Design Space
Yi Liu, Wengen Li, Jihong Guan, Shuigeng Zhou, Yichao Zhang
arXiv  ·  01 Jan 2025  ·  doi:10.48550/arXiv.2503.23717

All

2025

Ensuring Pre-Fusion Modality Consistency: A New Approach to Multimodal Sentiment Detection
Ensuring Pre-Fusion Modality Consistency: A New Approach to Multimodal Sentiment Detection
Yulou Shu, Wengen Li, Yu-Ping Ruan, Wuchao Liu, Yichao Zhang, Jihong Guan, Shuigeng Zhou
ACM Transactions on Intelligent Systems and Technology  ·  16 Oct 2025  ·  doi:10.1145/3748658
Cross-trajectory spatiotemporal fusion for user identity linkage
Cross-trajectory spatiotemporal fusion for user identity linkage
Yue Yang, Yichao Zhang, Jihong Guan, Shuigeng Zhou, Wengen Li
Neurocomputing  ·  01 Oct 2025  ·  doi:10.1016/j.neucom.2025.130509
Towards Robust and Interpretable Spatial-Temporal Graph Modeling for Traffic Prediction
Towards Robust and Interpretable Spatial-Temporal Graph Modeling for Traffic Prediction
Hanchen Yang, Jiannong Cao, Wengen Li, Yu Yang, Xiaoyi Li, Lingbai Kong, Yichao Zhang, Jihong Guan, Shuigeng Zhou
ACM Transactions on Knowledge Discovery from Data  ·  25 Sep 2025  ·  doi:10.1145/3769297
Spatial-Temporal Data Mining for Ocean Science: Data, Methodologies and Opportunities
Spatial-Temporal Data Mining for Ocean Science: Data, Methodologies and Opportunities
Hanchen Yang, Jiannong Cao, Wengen Li, Shuyu Wang, Hui Li, Jihong Guan, Shuigeng Zhou
ACM Transactions on Knowledge Discovery from Data  ·  21 Aug 2025  ·  doi:10.1145/3748259
Raker: A Relation-Aware Knowledge Reasoning Model for Inductive Relation Prediction
Raker: A Relation-Aware Knowledge Reasoning Model for Inductive Relation Prediction
Jiaqi Wang, Wengen Li, Yulou Shu, Jihong Guan, Yichao Zhang, Shuigeng Zhou
ACM Transactions on Knowledge Discovery from Data  ·  21 Aug 2025  ·  doi:10.1145/3745029
Cross-Region Graph Convolutional Network with Periodicity Shift Adaptation for Wide-Area SST Prediction
Cross-Region Graph Convolutional Network with Periodicity Shift Adaptation for Wide-Area SST Prediction
Han Peng, Wengen Li, Chang Jin, Yichao Zhang, Jihong Guan, Hanchen Yang, Shuigeng Zhou
ACM Transactions on Intelligent Systems and Technology  ·  22 Jul 2025  ·  doi:10.1145/3735646
CorMulT: A Semi-Supervised Modality Correlation-Aware Multimodal Transformer for Sentiment Analysis
CorMulT: A Semi-Supervised Modality Correlation-Aware Multimodal Transformer for Sentiment Analysis
Yangmin Li, Ruiqi Zhu, Wengen Li
IEEE Transactions on Affective Computing  ·  01 Jul 2025  ·  doi:10.1109/TAFFC.2025.3559866
PR-CLIP: Cross-Modal Positional Reconstruction for Remote Sensing Image–Text Retrieval
PR-CLIP: Cross-Modal Positional Reconstruction for Remote Sensing Image–Text Retrieval
Jihong Guan, Yulou Shu, Wengen Li, Zihan Song, Yichao Zhang
Remote Sensing  ·  20 Jun 2025  ·  doi:10.3390/rs17132117
Effective and Explainable Molecular Property Prediction by Chain-of-Thought Enabled Large Language Models and Multi-Modal Molecular Information Fusion
Effective and Explainable Molecular Property Prediction by Chain-of-Thought Enabled Large Language Models and Multi-Modal Molecular Information Fusion
Chang Jin, Siyuan Guo, Shuigeng Zhou, Jihong Guan
Journal of Chemical Information and Modeling  ·  20 May 2025  ·  doi:10.1021/acs.jcim.5c00577
MVST: A Multi-View Spatial-Temporal Model for Fine-Grained Crime Prediction
MVST: A Multi-View Spatial-Temporal Model for Fine-Grained Crime Prediction
Chang Wei, Wengen Li, Yichao Zhang, Jihong Guan, Shuigeng Zhou
ACM Transactions on Intelligent Systems and Technology  ·  16 Apr 2025  ·  doi:10.1145/3712607
M<sup>3</sup>-20M: A large-scale multi-modal molecule dataset for AI-driven drug design and discovery
M3-20M: A large-scale multi-modal molecule dataset for AI-driven drug design and discovery
Siyuan Guo, Lexuan Wang, Chang Jin, Jinxian Wang, Han Peng, Huayang Shi, Wengen Li, Jihong Guan, Shuigeng Zhou
Journal of Bioinformatics and Computational Biology  ·  01 Apr 2025  ·  doi:10.1142/S0219720025500064
Traffexplainer: A Framework Toward GNN-Based Interpretable Traffic Prediction
Traffexplainer: A Framework Toward GNN-Based Interpretable Traffic Prediction
Lingbai Kong, Hanchen Yang, Wengen Li, Yichao Zhang, Jihong Guan, Shuigeng Zhou
IEEE Transactions on Artificial Intelligence  ·  01 Mar 2025  ·  doi:10.1109/TAI.2024.3459857
MSAF: Multi-Modal Sentiment Detection via Multi-Scale Adaptive Fusion
MSAF: Multi-Modal Sentiment Detection via Multi-Scale Adaptive Fusion
Jihong Guan, Yulou Shu, Wuchao Liu, Wengen Li, Shuigeng Zhou, Yichao Zhang
IEEE Transactions on Artificial Intelligence  ·  01 Jan 2025  ·  doi:10.1109/TAI.2025.3602409
Topic-aware Multi-heterogeneous Graph Neural Network for Predicting the Next Participant in Information Cascades
Topic-aware Multi-heterogeneous Graph Neural Network for Predicting the Next Participant in Information Cascades
Yichao Zhang, Zejian Wang, Guanghui Wen, Jihong Guan, Shuigeng Zhou, Wengen Li, Zhiwei Cao
IEEE Transactions on Artificial Intelligence  ·  01 Jan 2025  ·  doi:10.1109/TAI.2025.3596930
Spatiotemporal Attention Network for Chl-a Prediction With Sparse Multifactor Observations
Spatiotemporal Attention Network for Chl-a Prediction With Sparse Multifactor Observations
Xudong Jiang, Yunfan Liu, Shuyu Wang, Wengen Li, Jihong Guan
IEEE Geoscience and Remote Sensing Letters  ·  01 Jan 2025  ·  doi:10.1109/LGRS.2025.3563458
LLM4HRS: LLM-Based Spatiotemporal Imputation Model for Highly Sparse Remote Sensing Data
LLM4HRS: LLM-Based Spatiotemporal Imputation Model for Highly Sparse Remote Sensing Data
Shuyu Wang, Wengen Li, Hanchen Yang, Jihong Guan, Xiwei Liu, Yichao Zhang, Rufu Qin, Shuigeng Zhou
IEEE Transactions on Geoscience and Remote Sensing  ·  01 Jan 2025  ·  doi:10.1109/TGRS.2025.3555634
Semantic Prototyping With CLIP for Few-Shot Object Detection in Remote Sensing Images
Semantic Prototyping With CLIP for Few-Shot Object Detection in Remote Sensing Images
Tianying Liu, Shuigeng Zhou, Wengen Li, Yichao Zhang, Jihong Guan
IEEE Transactions on Geoscience and Remote Sensing  ·  01 Jan 2025  ·  doi:10.1109/TGRS.2025.3550372
C<sup>2</sup>RS: Multimodal Knowledge Graph Completion with Cross-Modal Consistency and Relation Semantics
C2RS: Multimodal Knowledge Graph Completion with Cross-Modal Consistency and Relation Semantics
Yulou Shu, Wengen Li, Jiaqi Wang, Yichao Zhang, Jihong Guan, Shuigeng Zhou
IEEE Transactions on Artificial Intelligence  ·  01 Jan 2025  ·  doi:10.1109/TAI.2025.3548621
Effective Cloud Removal for Remote Sensing Images by an Improved Mean-Reverting Denoising Model with Elucidated Design Space
Effective Cloud Removal for Remote Sensing Images by an Improved Mean-Reverting Denoising Model with Elucidated Design Space
Yi Liu, Wengen Li, Jihong Guan, Shuigeng Zhou, Yichao Zhang
arXiv  ·  01 Jan 2025  ·  doi:10.48550/arXiv.2503.23717
Limitation of Time Promotes Cooperation in Structured Collaboration Systems
Limitation of Time Promotes Cooperation in Structured Collaboration Systems
Yichao Zhang, Jiasheng Wang, Guanghui Wen, Jihong Guan, Shuigeng Zhou, Guanrong Chen, Krishnendu Chatterjee, Matjaž Perc
IEEE Transactions on Network Science and Engineering  ·  01 Jan 2025  ·  doi:10.1109/TNSE.2024.3481434
A lightweight video anomaly detection model with weak supervision and adaptive instance selection
A lightweight video anomaly detection model with weak supervision and adaptive instance selection
Yang Wang, Jiaogen Zhou, Jihong Guan
Neurocomputing  ·  01 Jan 2025  ·  doi:10.1016/j.neucom.2024.128698
CausalFormer: An Interpretable Transformer for Temporal Causal Discovery
CausalFormer: An Interpretable Transformer for Temporal Causal Discovery
Lingbai Kong, Wengen Li, Hanchen Yang, Yichao Zhang, Jihong Guan, Shuigeng Zhou
IEEE Transactions on Knowledge and Data Engineering  ·  01 Jan 2025  ·  doi:10.1109/TKDE.2024.3484461

2024

STAD: Ship trajectory anomaly detection in ocean with dynamic pattern clustering
STAD: Ship trajectory anomaly detection in ocean with dynamic pattern clustering
Hui Li, Wengen Li, Shuyu Wang, Hanchen Yang, Jihong Guan, Yichao Zhang
Ocean Engineering  ·  01 Dec 2024  ·  doi:10.1016/j.oceaneng.2024.119530
Towards Effective Causal Partitioning by Edge Cutting of Adjoint Graph
Towards Effective Causal Partitioning by Edge Cutting of Adjoint Graph
Hao Zhang, Yixin Ren, Yewei Xia, Shuigeng Zhou, Jihong Guan
IEEE Transactions on Pattern Analysis and Machine Intelligence  ·  01 Dec 2024  ·  doi:10.1109/TPAMI.2024.3435503
Hybrid Causal Feature Selection for Cancer Biomarker Identification From RNA-Seq Data
Hybrid Causal Feature Selection for Cancer Biomarker Identification From RNA-Seq Data
Wenwei Xu, Hao Zhang, Yewei Xia, Yixin Ren, Jihong Guan, Shuigeng Zhou
IEEE/ACM Transactions on Computational Biology and Bioinformatics  ·  01 Nov 2024  ·  doi:10.1109/TCBB.2024.3406922
Diffusing on Two Levels and Optimizing for Multiple Properties: A Novel Approach to Generating Molecules With Desirable Properties
Diffusing on Two Levels and Optimizing for Multiple Properties: A Novel Approach to Generating Molecules With Desirable Properties
Siyuan Guo, Jihong Guan, Shuigeng Zhou
IEEE/ACM Transactions on Computational Biology and Bioinformatics  ·  01 Nov 2024  ·  doi:10.1109/TCBB.2024.3434461
Weakly Correlated Multimodal Sentiment Analysis: New Dataset and Topic-Oriented Model
Weakly Correlated Multimodal Sentiment Analysis: New Dataset and Topic-Oriented Model
Wuchao Liu, Wengen Li, Yu-Ping Ruan, Yulou Shu, Juntao Chen, Yina Li, Caili Yu, Yichao Zhang, Jihong Guan, Shuigeng Zhou
IEEE Transactions on Affective Computing  ·  01 Oct 2024  ·  doi:10.1109/TAFFC.2024.3396144
Variate Associated Domain Adaptation for Unsupervised Multivariate Time Series Anomaly Detection
Variate Associated Domain Adaptation for Unsupervised Multivariate Time Series Anomaly Detection
Yifan He, Yatao Bian, Xi Ding, Bingzhe Wu, Jihong Guan, Ji Zhang, Shuigeng Zhou
ACM Transactions on Knowledge Discovery from Data  ·  26 Jul 2024  ·  doi:10.1145/3663573
Prediction of Disk Failure Based on Classification Intensity Resampling
Prediction of Disk Failure Based on Classification Intensity Resampling
Sheng Wu, Jihong Guan
Information  ·  31 May 2024  ·  doi:10.3390/info15060322
Fault Location Method Based on Dynamic Operation and Maintenance Map and Common Alarm Points Analysis
Fault Location Method Based on Dynamic Operation and Maintenance Map and Common Alarm Points Analysis
Sheng Wu, Jihong Guan
Algorithms  ·  16 May 2024  ·  doi:10.3390/a17050217
Molecular property prediction based on graph structure learning
Molecular property prediction based on graph structure learning
Bangyi Zhao, Weixia Xu, Jihong Guan, Shuigeng Zhou
Bioinformatics  ·  01 May 2024  ·  doi:10.1093/bioinformatics/btae304
Multivariate Time Series Forecasting with Causal-Temporal Attention Network
Multivariate Time Series Forecasting with Causal-Temporal Attention Network
Wenbo Liu, Yifan He, Jihong Guan, Shuigeng Zhou
ICASSP 2024 - 2024 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)  ·  14 Apr 2024  ·  doi:10.1109/ICASSP48485.2024.10448031
Tail Classes Matter: Long-Tailed Object Detection Revisited
Tail Classes Matter: Long-Tailed Object Detection Revisited
Yinglu Zhang, Chenbo Zhang, Lu Zhang, Tianying Liu, Jihong Guan, Xinkai Liang, Jiajia Zhao, Shuigeng Zhou
ICASSP 2024 - 2024 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)  ·  14 Apr 2024  ·  doi:10.1109/ICASSP48485.2024.10446683
Video Anomaly Prediction: Problem, Dataset and Method
Video Anomaly Prediction: Problem, Dataset and Method
Yang Wang, Jun Xu, Jiaogen Zhou, Jihong Guan
ICASSP 2024 - 2024 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)  ·  14 Apr 2024  ·  doi:10.1109/ICASSP48485.2024.10448187
Weakly Supervised Few-Shot Object Detection with DETR
Weakly Supervised Few-Shot Object Detection with DETR
Chenbo Zhang, Yinglu Zhang, Lu Zhang, Jiajia Zhao, Jihong Guan, Shuigeng Zhou
Proceedings of the AAAI Conference on Artificial Intelligence  ·  24 Mar 2024  ·  doi:10.1609/aaai.v38i7.28528
UniOcean: A Unified Framework for Predicting Multiple Ocean Factors of Varying Temporal Scales
UniOcean: A Unified Framework for Predicting Multiple Ocean Factors of Varying Temporal Scales
Hanchen Yang, Yuwei Chen, Jiannong Cao, Wengen Li, Yu Yang, Shuyu Wang, Jihong Guan, Rufu Qin, Shuigeng Zhou
IEEE Transactions on Geoscience and Remote Sensing  ·  01 Jan 2024  ·  doi:10.1109/TGRS.2024.3506058
Self-Supervised Spatiotemporal Imputation Model for Highly Sparse Chl-a Data via Fusing Multisource Satellite Data
Self-Supervised Spatiotemporal Imputation Model for Highly Sparse Chl-a Data via Fusing Multisource Satellite Data
Shuyu Wang, Wengen Li, Jihong Guan, Xiwei Liu, Yichao Zhang, Shuigeng Zhou
IEEE Transactions on Geoscience and Remote Sensing  ·  01 Jan 2024  ·  doi:10.1109/TGRS.2024.3440912
Indicator Fault Detection Method Based on Periodic Self Discovery and Historical Anomaly Filtering
Indicator Fault Detection Method Based on Periodic Self Discovery and Historical Anomaly Filtering
Sheng Wu, Jihong Guan
IEEE Access  ·  01 Jan 2024  ·  doi:10.1109/ACCESS.2024.3361672

2023

A new and effective two-step clustering approach for single cell RNA sequencing data
A new and effective two-step clustering approach for single cell RNA sequencing data
Ruiyi Li, Jihong Guan, Zhiye Wang, Shuigeng Zhou
BMC Genomics  ·  09 Nov 2023  ·  doi:10.1186/s12864-023-09577-x
STIRER: A Unified Model for Low-Resolution Scene Text Image Recovery and Recognition
STIRER: A Unified Model for Low-Resolution Scene Text Image Recovery and Recognition
Minyi Zhao, Shijie Xuyang, Jihong Guan, Shuigeng Zhou
Proceedings of the 31st ACM International Conference on Multimedia  ·  26 Oct 2023  ·  doi:10.1145/3581783.3612488
Zero-Shot Object Detection by Semantics-Aware DETR with Adaptive Contrastive Loss
Zero-Shot Object Detection by Semantics-Aware DETR with Adaptive Contrastive Loss
Huan Liu, Lu Zhang, Jihong Guan, Shuigeng Zhou
Proceedings of the 31st ACM International Conference on Multimedia  ·  26 Oct 2023  ·  doi:10.1145/3581783.3612523
IDDR-NGP:Incorporating Detectors for Distractors Removal with Instant Neural Radiance Field
IDDR-NGP:Incorporating Detectors for Distractors Removal with Instant Neural Radiance Field
Xianliang Huang, Jiajie Gou, Shuhang Chen, Zhizhou Zhong, Jihong Guan, Shuigeng Zhou
Proceedings of the 31st ACM International Conference on Multimedia  ·  26 Oct 2023  ·  doi:10.1145/3581783.3612045
Meta-ZSDETR: Zero-shot DETR with Meta-learning
Meta-ZSDETR: Zero-shot DETR with Meta-learning
Lu Zhang, Chenbo Zhang, Jiajia Zhao, Jihong Guan, Shuigeng Zhou
2023 IEEE/CVF International Conference on Computer Vision (ICCV)  ·  01 Oct 2023  ·  doi:10.1109/ICCV51070.2023.00630
Bird Object Detection: Dataset Construction, Model Performance Evaluation, and Model Lightweighting
Bird Object Detection: Dataset Construction, Model Performance Evaluation, and Model Lightweighting
Yang Wang, Jiaogen Zhou, Caiyun Zhang, Zhaopeng Luo, Xuexue Han, Yanzhu Ji, Jihong Guan
Animals  ·  14 Sep 2023  ·  doi:10.3390/ani13182924
MuSTC: A Multi-Stage Spatio–Temporal Clustering Method for Uncovering the Regionality of Global SST
MuSTC: A Multi-Stage Spatio–Temporal Clustering Method for Uncovering the Regionality of Global SST
Han Peng, Wengen Li, Chang Jin, Hanchen Yang, Jihong Guan
Atmosphere  ·  29 Aug 2023  ·  doi:10.3390/atmos14091358
Self-supervised learning with chemistry-aware fragmentation for effective molecular property prediction
Self-supervised learning with chemistry-aware fragmentation for effective molecular property prediction
Ailin Xie, Ziqiao Zhang, Jihong Guan, Shuigeng Zhou
Briefings in Bioinformatics  ·  20 Aug 2023  ·  doi:10.1093/bib/bbad296
All in One: Multi-Task Prompting for Graph Neural Networks
All in One: Multi-Task Prompting for Graph Neural Networks
Xiangguo Sun, Hong Cheng, Jia Li, Bo Liu, Jihong Guan
Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining  ·  04 Aug 2023  ·  doi:10.1145/3580305.3599256
PCGAN: a generative approach for protein complex identification from protein interaction networks
PCGAN: a generative approach for protein complex identification from protein interaction networks
Yuliang Pan, Yang Wang, Jihong Guan, Shuigeng Zhou
Bioinformatics  ·  01 Aug 2023  ·  doi:10.1093/bioinformatics/btad473
HiGRN: A Hierarchical Graph Recurrent Network for Global Sea Surface Temperature Prediction
HiGRN: A Hierarchical Graph Recurrent Network for Global Sea Surface Temperature Prediction
Hanchen Yang, Wengen Li, Siyun Hou, Jihong Guan, Shuigeng Zhou
ACM Transactions on Intelligent Systems and Technology  ·  21 Jul 2023  ·  doi:10.1145/3597937
Latent feature reconstruction for unsupervised anomaly detection
Latent feature reconstruction for unsupervised anomaly detection
Jinghuang Lin, Yifan He, Weixia Xu, Jihong Guan, Ji Zhang, Shuigeng Zhou
Applied Intelligence  ·  13 Jul 2023  ·  doi:10.1007/s10489-023-04767-2
Conditional Independence Test Based on Residual Similarity
Conditional Independence Test Based on Residual Similarity
Hao Zhang, Yewei Xia, Kun Zhang, Shuigeng Zhou, Jihong Guan
ACM Transactions on Knowledge Discovery from Data  ·  28 Jun 2023  ·  doi:10.1145/3593810
Differentially Private Nonlinear Causal Discovery from Numerical Data
Differentially Private Nonlinear Causal Discovery from Numerical Data
Hao Zhang, Yewei Xia, Yixin Ren, Jihong Guan, Shuigeng Zhou
Proceedings of the AAAI Conference on Artificial Intelligence  ·  26 Jun 2023  ·  doi:10.1609/aaai.v37i10.26452
Multi-Level Wavelet Mapping Correlation for Statistical Dependence Measurement: Methodology and Performance
Multi-Level Wavelet Mapping Correlation for Statistical Dependence Measurement: Methodology and Performance
Yixin Ren, Hao Zhang, Yewei Xia, Jihong Guan, Shuigeng Zhou
Proceedings of the AAAI Conference on Artificial Intelligence  ·  26 Jun 2023  ·  doi:10.1609/aaai.v37i5.25799
Short Memory-Based Human Strategy Modeling in Social Dilemmas
Short Memory-Based Human Strategy Modeling in Social Dilemmas
Xiang-Hao Yang, Hui-Yun Huang, Yi-Chao Zhang, Jia-Sheng Wang, Ji-Hong Guan, Shui-Geng Zhou
Mathematics  ·  15 Jun 2023  ·  doi:10.3390/math11122709
Recent Few-shot Object Detection Algorithms: A Survey with Performance Comparison
Recent Few-shot Object Detection Algorithms: A Survey with Performance Comparison
Tianying Liu, Lu Zhang, Yang Wang, Jihong Guan, Yanwei Fu, Jiajia Zhao, Shuigeng Zhou
ACM Transactions on Intelligent Systems and Technology  ·  15 Jun 2023  ·  doi:10.1145/3593588
Video anomaly detection based on spatio-temporal relationships among objects
Video anomaly detection based on spatio-temporal relationships among objects
Yang Wang, Tianying Liu, Jiaogen Zhou, Jihong Guan
Neurocomputing  ·  01 May 2023  ·  doi:10.1016/j.neucom.2023.02.027
Molecular property prediction by contrastive learning with attention-guided positive sample selection
Molecular property prediction by contrastive learning with attention-guided positive sample selection
Jinxian Wang, Jihong Guan, Shuigeng Zhou
Bioinformatics  ·  20 Apr 2023  ·  doi:10.1093/bioinformatics/btad258
On Evaluating the Predictability of Sea Surface Temperature Using Entropy
On Evaluating the Predictability of Sea Surface Temperature Using Entropy
Chang Jin, Han Peng, Hanchen Yang, Wengen Li, Jihong Guan
Remote Sensing  ·  07 Apr 2023  ·  doi:10.3390/rs15081956
Enhanced Adaptive Graph Convolutional Network for Long-Term Fine-Grained SST Prediction
Enhanced Adaptive Graph Convolutional Network for Long-Term Fine-Grained SST Prediction
Han Peng, Chang Jin, Wengen Li, Jihong Guan
IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing  ·  01 Jan 2023  ·  doi:10.1109/JSTARS.2023.3308033

2022

STA-GAN: A Spatio-Temporal Attention Generative Adversarial Network for Missing Value Imputation in Satellite Data
STA-GAN: A Spatio-Temporal Attention Generative Adversarial Network for Missing Value Imputation in Satellite Data
Shuyu Wang, Wengen Li, Siyun Hou, Jihong Guan, Jiamin Yao
Remote Sensing  ·  23 Dec 2022  ·  doi:10.3390/rs15010088
Effectively Clustering Single Cell RNA Sequencing Data by Sparse Representation
Effectively Clustering Single Cell RNA Sequencing Data by Sparse Representation
Rui-Yi Li, Zhiye Wang, Jihong Guan, Shuigeng Zhou
IEEE/ACM Transactions on Computational Biology and Bioinformatics  ·  01 Nov 2022  ·  doi:10.1109/tcbb.2021.3128576
An Extreme Semi-supervised Framework Based on Transformer for Network Intrusion Detection
An Extreme Semi-supervised Framework Based on Transformer for Network Intrusion Detection
Yangmin Li, Xinhang Yuan, Wengen Li
Proceedings of the 31st ACM International Conference on Information & Knowledge Management  ·  17 Oct 2022  ·  doi:10.1145/3511808.3557549
Fusing Geometric and Scene Information for Cross-View Geo-Localization
Fusing Geometric and Scene Information for Cross-View Geo-Localization
Siyuan Guo, Tianying Liu, Wengen Li, Jihong Guan, Shuigeng Zhou
Proceedings of the 31st ACM International Conference on Information & Knowledge Management  ·  17 Oct 2022  ·  doi:10.1145/3511808.3557633
BidH: A Bidirectional Hierarchical Model for Nested Named Entity Recognition
BidH: A Bidirectional Hierarchical Model for Nested Named Entity Recognition
Wanyang Xu, Wengen Li, Jihong Guan, Shuigeng Zhou
Proceedings of the 31st ACM International Conference on Information & Knowledge Management  ·  17 Oct 2022  ·  doi:10.1145/3511808.3557554
Hierarchical Few-Shot Object Detection
Hierarchical Few-Shot Object Detection
Lu Zhang, Yang Wang, Jiaogen Zhou, Chenbo Zhang, Yinglu Zhang, Jihong Guan, Yatao Bian, Shuigeng Zhou
Proceedings of the 30th ACM International Conference on Multimedia  ·  10 Oct 2022  ·  doi:10.1145/3503161.3548412
CDFM: A cross‐domain few‐shot model for marine plankton classification
CDFM: A cross‐domain few‐shot model for marine plankton classification
Jin Guo, Wengen Li, Jihong Guan, Hang Gao, Baobo Liu, Lili Gong
IET Computer Vision  ·  14 Sep 2022  ·  doi:10.1049/cvi2.12137
Identifying essential proteins from protein–protein interaction networks based on influence maximization
Identifying essential proteins from protein–protein interaction networks based on influence maximization
Weixia Xu, Yunfeng Dong, Jihong Guan, Shuigeng Zhou
BMC Bioinformatics  ·  16 Aug 2022  ·  doi:10.1186/s12859-022-04874-w
TiC2D: Trajectory Inference From Single-Cell RNA-Seq Data Using Consensus Clustering
TiC2D: Trajectory Inference From Single-Cell RNA-Seq Data Using Consensus Clustering
Yanglan Gan, Ning Li, Cheng Guo, Guobing Zou, Jihong Guan, Shuigeng Zhou
IEEE/ACM Transactions on Computational Biology and Bioinformatics  ·  01 Jul 2022  ·  doi:10.1109/tcbb.2021.3061720
TiC2D: Trajectory Inference From Single-Cell RNA-Seq Data Using Consensus Clustering
TiC2D: Trajectory Inference From Single-Cell RNA-Seq Data Using Consensus Clustering
Yanglan Gan, Ning Li, Cheng Guo, Guobing Zou, Jihong Guan, Shuigeng Zhou
IEEE/ACM Transactions on Computational Biology and Bioinformatics  ·  01 Jul 2022  ·  doi:10.1109/TCBB.2021.3061720
Residual Similarity Based Conditional Independence Test and Its Application in Causal Discovery
Residual Similarity Based Conditional Independence Test and Its Application in Causal Discovery
Hao Zhang, Shuigeng Zhou, Kun Zhang, Jihong Guan
Proceedings of the AAAI Conference on Artificial Intelligence  ·  28 Jun 2022  ·  doi:10.1609/aaai.v36i5.20539
SIM: an improved few-shot image classification model with multi-task learning
SIM: an improved few-shot image classification model with multi-task learning
Jin Guo, Wengen Li, Jihong Guan, Hang Gao, Baobo Liu, Lili Gong
Journal of Electronic Imaging  ·  28 Jun 2022  ·  doi:10.1117/1.JEI.31.3.033044
Effective drug–target interaction prediction with mutual interaction neural network
Effective drug–target interaction prediction with mutual interaction neural network
Fei Li, Ziqiao Zhang, Jihong Guan, Shuigeng Zhou
Bioinformatics  ·  02 Jun 2022  ·  doi:10.1093/bioinformatics/btac377
IRDA: Incremental Reinforcement Learning for Dynamic Resource Allocation
IRDA: Incremental Reinforcement Learning for Dynamic Resource Allocation
Jia Wang, Jiannong Cao, Senzhang Wang, Zhongyu Yao, Wengen Li
IEEE Transactions on Big Data  ·  01 Jun 2022  ·  doi:10.1109/TBDATA.2020.2988273
The Complexities of Random-Turn Hex, Square, and Triangle Games
The Complexities of Random-Turn Hex, Square, and Triangle Games
Yi Yang, Shuigeng Zhou, Jihong Guan, Chuansheng Shen
IEEE Transactions on Games  ·  01 Jun 2022  ·  doi:10.1109/TG.2020.3033720
Multi-Modal Learning with Text Merging for TEXTVQA
Multi-Modal Learning with Text Merging for TEXTVQA
Changsheng Xu, Zhenlong Xu, Yifan He, Shuigeng Zhou, Jihong Guan
ICASSP 2022 - 2022 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)  ·  23 May 2022  ·  doi:10.1109/ICASSP43922.2022.9746969
MIMO: A Unified Spatio-Temporal Model for Multi-Scale Sea Surface Temperature Prediction
MIMO: A Unified Spatio-Temporal Model for Multi-Scale Sea Surface Temperature Prediction
Siyun Hou, Wengen Li, Tianying Liu, Shuigeng Zhou, Jihong Guan, Rufu Qin, Zhenfeng Wang
Remote Sensing  ·  14 May 2022  ·  doi:10.3390/rs14102371
Learning Causal Structures Based on Divide and Conquer
Learning Causal Structures Based on Divide and Conquer
Hao Zhang, Shuigeng Zhou, Chuanxu Yan, Jihong Guan, Xin Wang, Ji Zhang, Jun Huan
IEEE Transactions on Cybernetics  ·  01 May 2022  ·  doi:10.1109/TCYB.2020.3010004
Link Weight Prediction Using Weight Perturbation and Latent Factor
Link Weight Prediction Using Weight Perturbation and Latent Factor
Zhiwei Cao, Yichao Zhang, Jihong Guan, Shuigeng Zhou, Guanrong Chen
IEEE Transactions on Cybernetics  ·  01 Mar 2022  ·  doi:10.1109/TCYB.2020.2995595
Deep structural clustering for single-cell RNA-seq data jointly through autoencoder and graph neural network
Deep structural clustering for single-cell RNA-seq data jointly through autoencoder and graph neural network
Yanglan Gan, Xingyu Huang, Guobing Zou, Shuigeng Zhou, Jihong Guan
Briefings in Bioinformatics  ·  16 Feb 2022  ·  doi:10.1093/bib/bbac018
A Novel Demand Dispatching Model for Autonomous On-Demand Services
A Novel Demand Dispatching Model for Autonomous On-Demand Services
Lei Yang, Xi Yu, Jiannong Cao, Wengen Li, Yuqi Wang, Michal Szczecinski
IEEE Transactions on Services Computing  ·  01 Jan 2022  ·  doi:10.1109/TSC.2019.2941680
Robustly Recognizing Irregular Scene Text by Rectifying Principle Irregularities
Robustly Recognizing Irregular Scene Text by Rectifying Principle Irregularities
Changsheng Xu, Yang Wang, Fan Bai, Jihong Guan, Shuigeng Zhou
2022 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV)  ·  01 Jan 2022  ·  doi:10.1109/WACV51458.2022.00140
EPiDA: An Easy Plug-in Data Augmentation Framework for High Performance Text Classification
EPiDA: An Easy Plug-in Data Augmentation Framework for High Performance Text Classification
Minyi Zhao, Lu Zhang, Yi Xu, Jiandong Ding, Jihong Guan, Shuigeng Zhou
Proceedings of the 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies  ·  01 Jan 2022  ·  doi:10.18653/v1/2022.naacl-main.349

2021

Protein Function Prediction Based on PPI Networks: Network Reconstruction vs Edge Enrichment
Protein Function Prediction Based on PPI Networks: Network Reconstruction vs Edge Enrichment
Jiaogen Zhou, Wei Xiong, Yang Wang, Jihong Guan
Frontiers in Genetics  ·  14 Dec 2021  ·  doi:10.3389/fgene.2021.758131
Privacy and efficiency guaranteed social subgraph matching
Privacy and efficiency guaranteed social subgraph matching
Kai Huang, Haibo Hu, Shuigeng Zhou, Jihong Guan, Qingqing Ye, Xiaofang Zhou
The VLDB Journal  ·  11 Nov 2021  ·  doi:10.1007/s00778-021-00706-0
Protein–protein interaction prediction based on ordinal regression and recurrent convolutional neural networks
Protein–protein interaction prediction based on ordinal regression and recurrent convolutional neural networks
Weixia Xu, Yangyun Gao, Yang Wang, Jihong Guan
BMC Bioinformatics  ·  08 Oct 2021  ·  doi:10.1186/s12859-021-04369-0
Combined cause inference: Definition, model and performance
Combined cause inference: Definition, model and performance
Hao Zhang, Chuanxu Yan, Shuigeng Zhou, Jihong Guan, Ji Zhang
Information Sciences  ·  01 Oct 2021  ·  doi:10.1016/j.ins.2021.06.004
A Chaotic Ant Colony Optimized Link Prediction Algorithm
A Chaotic Ant Colony Optimized Link Prediction Algorithm
Zhiwei Cao, Yichao Zhang, Jihong Guan, Shuigeng Zhous, Guanghui Wen
IEEE Transactions on Systems, Man, and Cybernetics: Systems  ·  01 Sep 2021  ·  doi:10.1109/TSMC.2019.2947516
RBA-CenterNet: Feature Enhancement by Rotated Border Alignment for Oriented Object Detection
RBA-CenterNet: Feature Enhancement by Rotated Border Alignment for Oriented Object Detection
Tianying Liu, Yang Wang, Siyun Hou, Wengen Li, Jihong Guan, Shuigeng Zhou, Rufu Qin
2021 International Joint Conference on Neural Networks (IJCNN)  ·  18 Jul 2021  ·  doi:10.1109/IJCNN52387.2021.9534400
Classification of Marine Plankton Based on Few-shot Learning
Classification of Marine Plankton Based on Few-shot Learning
Jin Guo, Jihong Guan
Arabian Journal for Science and Engineering  ·  23 Jun 2021  ·  doi:10.1007/s13369-021-05786-2
Boosting scRNA-seq data clustering by cluster-aware feature weighting
Boosting scRNA-seq data clustering by cluster-aware feature weighting
Rui-Yi Li, Jihong Guan, Shuigeng Zhou
BMC Bioinformatics  ·  02 Jun 2021  ·  doi:10.1186/s12859-021-04033-7
Accurate Few-shot Object Detection with Support-Query Mutual Guidance and Hybrid Loss
Accurate Few-shot Object Detection with Support-Query Mutual Guidance and Hybrid Loss
Lu Zhang, Shuigeng Zhou, Jihong Guan, Ji Zhang
2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR)  ·  01 Jun 2021  ·  doi:10.1109/CVPR46437.2021.01419
Testing Independence Between Linear Combinations for Causal Discovery
Testing Independence Between Linear Combinations for Causal Discovery
Hao Zhang, Kun Zhang, Shuigeng Zhou, Jihong Guan, Ji Zhang
Proceedings of the AAAI Conference on Artificial Intelligence  ·  18 May 2021  ·  doi:10.1609/aaai.v35i7.16810
FraGAT: a fragment-oriented multi-scale graph attention model for molecular property prediction
FraGAT: a fragment-oriented multi-scale graph attention model for molecular property prediction
Ziqiao Zhang, Jihong Guan, Shuigeng Zhou
Bioinformatics  ·  26 Mar 2021  ·  doi:10.1093/bioinformatics/btab195
Classifying Cognitive Normal and Early Mild Cognitive Impairment of Alzheimer’s Disease by Applying Restricted Boltzmann Machine to fMRI Data
Classifying Cognitive Normal and Early Mild Cognitive Impairment of Alzheimer’s Disease by Applying Restricted Boltzmann Machine to fMRI Data
Shengbing Pei, Jihong Guan
Current Bioinformatics  ·  01 Feb 2021  ·  doi:10.2174/1574893615999200618152109
A general framework for privacy-preserving of data publication based on randomized response techniques
A general framework for privacy-preserving of data publication based on randomized response techniques
Chaobin Liu, Shixi Chen, Shuigeng Zhou, Jihong Guan, Yao Ma
Information Systems  ·  01 Feb 2021  ·  doi:10.1016/j.is.2020.101648
FedMDR: Federated Model Distillation with Robust Aggregation
FedMDR: Federated Model Distillation with Robust Aggregation
Yuxi Mi, Yutong Mu, Shuigeng Zhou, Jihong Guan
Lecture Notes in Computer Science  ·  01 Jan 2021  ·  doi:10.1007/978-3-030-85899-5_2
D2CL: A Dense Dilated Convolutional LSTM Model for Sea Surface Temperature Prediction
D2CL: A Dense Dilated Convolutional LSTM Model for Sea Surface Temperature Prediction
Siyun Hou, Wengen Li, Tianying Liu, Shuigeng Zhou, Jihong Guan, Rufu Qin, Zhenfeng Wang
IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing  ·  01 Jan 2021  ·  doi:10.1109/JSTARS.2021.3128577

2020

AligNet: alignment of protein-protein interaction networks
AligNet: alignment of protein-protein interaction networks
Adrià Alcalá, Ricardo Alberich, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
BMC Bioinformatics  ·  01 Nov 2020  ·  doi:10.1186/s12859-020-3502-1
Revealing dynamic communities in networks using genetic algorithm with merge and split operators
Revealing dynamic communities in networks using genetic algorithm with merge and split operators
Weihua Zhan, Lei Deng, Jihong Guan, Jun Niu, Dechao Sun
Physica A: Statistical Mechanics and its Applications  ·  01 Nov 2020  ·  doi:10.1016/j.physa.2020.124897
Recursive Balanced k-Subset Sum Partition for Rule-constrained Resource Allocation
Recursive Balanced k-Subset Sum Partition for Rule-constrained Resource Allocation
Zhuo Li, Jiannong Cao, Zhongyu Yao, Wengen Li, Yu Yang, Jia Wang
Proceedings of the 29th ACM International Conference on Information & Knowledge Management  ·  19 Oct 2020  ·  doi:10.1145/3340531.3412076
Computationally identifying hot spots in protein-DNA binding interfaces using an ensemble approach
Computationally identifying hot spots in protein-DNA binding interfaces using an ensemble approach
Yuliang Pan, Shuigeng Zhou, Jihong Guan
BMC Bioinformatics  ·  01 Sep 2020  ·  doi:10.1186/s12859-020-03675-3
Single-cell RNA-seq data clustering: A survey with performance comparison study
Single-cell RNA-seq data clustering: A survey with performance comparison study
Ruiyi Li, Jihong Guan, Shuigeng Zhou
Journal of Bioinformatics and Computational Biology  ·  01 Aug 2020  ·  doi:10.1142/S0219720020400053
TOP: A deep mixture representation learning method for boosting molecular toxicity prediction
TOP: A deep mixture representation learning method for boosting molecular toxicity prediction
Yuzhong Peng, Ziqiao Zhang, Qizhi Jiang, Jihong Guan, Shuigeng Zhou
Methods  ·  01 Jul 2020  ·  doi:10.1016/j.ymeth.2020.05.013
Denoising Protein–Protein interaction network via variational graph auto-encoder for protein complex detection
Denoising Protein–Protein interaction network via variational graph auto-encoder for protein complex detection
Heng Yao, Jihong Guan, Tianying Liu
Journal of Bioinformatics and Computational Biology  ·  01 Jun 2020  ·  doi:10.1142/S0219720020400107
Accurately Detecting Protein Complexes by Graph Embedding and Combining Functions with Interactions
Accurately Detecting Protein Complexes by Graph Embedding and Combining Functions with Interactions
Heng Yao, Yunjia Shi, Jihong Guan, Shuigeng Zhou
IEEE/ACM Transactions on Computational Biology and Bioinformatics  ·  01 May 2020  ·  doi:10.1109/TCBB.2019.2897769
Network as Regularization for Training Deep Neural Networks: Framework, Model and Performance
Network as Regularization for Training Deep Neural Networks: Framework, Model and Performance
Kai Tian, Yi Xu, Jihong Guan, Shuigeng Zhou
Proceedings of the AAAI Conference on Artificial Intelligence  ·  03 Apr 2020  ·  doi:10.1609/aaai.v34i04.6063
BigARM: A Big-Data-Driven Airport Resource Management Engine and Application Tools
BigARM: A Big-Data-Driven Airport Resource Management Engine and Application Tools
Ka Ho Wong, Jiannong Cao, Yu Yang, Wengen Li, Jia Wang, Zhongyu Yao, Suyan Xu, Esther Ahn Chian Ku, Chun On Wong, David Leung
Lecture Notes in Computer Science  ·  01 Jan 2020  ·  doi:10.1007/978-3-030-59419-0_48
Optimal Trade Execution Based on Deep Deterministic Policy Gradient
Optimal Trade Execution Based on Deep Deterministic Policy Gradient
Zekun Ye, Weijie Deng, Shuigeng Zhou, Yi Xu, Jihong Guan
Lecture Notes in Computer Science  ·  01 Jan 2020  ·  doi:10.1007/978-3-030-59410-7_42
GRACE: A Graph-Based Cluster Ensemble Approach for Single-Cell RNA-Seq Data Clustering
GRACE: A Graph-Based Cluster Ensemble Approach for Single-Cell RNA-Seq Data Clustering
Jihong Guan, Rui-Yi Li, Jiasheng Wang
IEEE Access  ·  01 Jan 2020  ·  doi:10.1109/ACCESS.2020.3022718

2019

Gaussian Weighting Reversion Strategy for Accurate Online Portfolio Selection
Gaussian Weighting Reversion Strategy for Accurate Online Portfolio Selection
Xia Cai, Zekun Ye
IEEE Transactions on Signal Processing  ·  01 Nov 2019  ·  doi:10.1109/TSP.2019.2941067
A novel privacy preserving method for data publication
A novel privacy preserving method for data publication
Chaobin Liu, Shixi Chen, Shuigeng Zhou, Jihong Guan, Yao Ma
Information Sciences  ·  01 Oct 2019  ·  doi:10.1016/j.ins.2019.06.022
Measuring Conditional Independence by Independent Residuals for Causal Discovery
Measuring Conditional Independence by Independent Residuals for Causal Discovery
Hao Zhang, Shuigeng Zhou, Jihong Guan, Jun (Luke) Huan
ACM Transactions on Intelligent Systems and Technology  ·  20 Sep 2019  ·  doi:10.1145/3325708
A General Framework for Unmet Demand Prediction in On-Demand Transport Services
A General Framework for Unmet Demand Prediction in On-Demand Transport Services
Wengen Li, Jiannong Cao, Jihong Guan, Shuigeng Zhou, Guanqing Liang, Winnie K. Y. So, Michal Szczecinski
IEEE Transactions on Intelligent Transportation Systems  ·  01 Aug 2019  ·  doi:10.1109/TITS.2018.2873092
Fusion analysis of resting-state networks and its application to Alzheimer's disease
Fusion analysis of resting-state networks and its application to Alzheimer's disease
Shengbing Pei, Jihong Guan, Shuigeng Zhou
Tsinghua Science and Technology  ·  01 Aug 2019  ·  doi:10.26599/TST.2018.9010099
Learning Competitive and Discriminative Reconstructions for Anomaly Detection
Learning Competitive and Discriminative Reconstructions for Anomaly Detection
Kai Tian, Shuigeng Zhou, Jianping Fan, Jihong Guan
Proceedings of the AAAI Conference on Artificial Intelligence  ·  17 Jul 2019  ·  doi:10.1609/aaai.v33i01.33015167
Recursively Learning Causal Structures Using Regression-Based Conditional Independence Test
Recursively Learning Causal Structures Using Regression-Based Conditional Independence Test
Hao Zhang, Shuigeng Zhou, Chuanxu Yan, Jihong Guan, Xin Wang
Proceedings of the AAAI Conference on Artificial Intelligence  ·  17 Jul 2019  ·  doi:10.1609/aaai.v33i01.33013108
RMDB: An Integrated Database of Single-cytosine-resolution DNA Methylation in Oryza Sativa
RMDB: An Integrated Database of Single-cytosine-resolution DNA Methylation in Oryza Sativa
Tiansheng Zhu, Jihong Guan, Hui Liu, Shuigeng Zhou
Current Bioinformatics  ·  16 Jul 2019  ·  doi:10.2174/1574893614666190211161717
Versatile Multiple Choice Learning and Its Application to Vision Computing
Versatile Multiple Choice Learning and Its Application to Vision Computing
Kai Tian, Yi Xu, Shuigeng Zhou, Jihong Guan
2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR)  ·  01 Jun 2019  ·  doi:10.1109/CVPR.2019.00651
Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM
Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM
Huidong Chen, Luca Albergante, Jonathan Y. Hsu, Caleb A. Lareau, Giosuè Lo Bosco, …, David M. Langenau, Andrei Zinovyev, Jason D. Buenrostro, Guo-Cheng Yuan, Luca Pinello
Nature Communications  ·  23 Apr 2019  ·  doi:10.1038/s41467-019-09670-4
Gaming Temporal Networks
Gaming Temporal Networks
Yichao Zhang, Guanghui Wen, Guanrong Chen, Jiasheng Wang, Minmin Xiong, Jihong Guan, Shuigeng Zhou
IEEE Transactions on Circuits and Systems II: Express Briefs  ·  01 Apr 2019  ·  doi:10.1109/TCSII.2018.2861621
Genome-wide analysis of epigenetic dynamics across human developmental stages and tissues
Genome-wide analysis of epigenetic dynamics across human developmental stages and tissues
Xia Zhang, Yanglan Gan, Guobing Zou, Jihong Guan, Shuigeng Zhou
BMC Genomics  ·  01 Apr 2019  ·  doi:10.1186/s12864-019-5472-0
Essential Protein Detection by Random Walk on Weighted Protein-Protein Interaction Networks
Essential Protein Detection by Random Walk on Weighted Protein-Protein Interaction Networks
Bin Xu, Jihong Guan, Yang Wang, Zewei Wang
IEEE/ACM Transactions on Computational Biology and Bioinformatics  ·  01 Mar 2019  ·  doi:10.1109/TCBB.2017.2701824
Simple Is Better: A Global Semantic Consistency Based End-to-End Framework for Effective Zero-Shot Learning
Simple Is Better: A Global Semantic Consistency Based End-to-End Framework for Effective Zero-Shot Learning
Fan Wu, Shuigeng Zhou, Kang Wang, Yi Xu, Jihong Guan, Jun Huan
Lecture Notes in Computer Science  ·  01 Jan 2019  ·  doi:10.1007/978-3-030-29908-8_8

2018

Classifying early and late mild cognitive impairment stages of Alzheimer’s disease by fusing default mode networks extracted with multiple seeds
Classifying early and late mild cognitive impairment stages of Alzheimer’s disease by fusing default mode networks extracted with multiple seeds
Shengbing Pei, Jihong Guan, Shuigeng Zhou
BMC Bioinformatics  ·  01 Dec 2018  ·  doi:10.1186/s12859-018-2528-0
Identification of cancer subtypes from single-cell RNA-seq data using a consensus clustering method
Identification of cancer subtypes from single-cell RNA-seq data using a consensus clustering method
Yanglan Gan, Ning Li, Guobing Zou, Yongchang Xin, Jihong Guan
BMC Medical Genomics  ·  01 Dec 2018  ·  doi:10.1186/s12920-018-0433-z
Predicting Enhancers from Multiple Cell Lines and Tissues across Different Developmental Stages Based On SVM Method
Predicting Enhancers from Multiple Cell Lines and Tissues across Different Developmental Stages Based On SVM Method
Hongda Bu, Jiaqi Hao, Jihong Guan, Shuigeng Zhou
Current Bioinformatics  ·  07 Nov 2018  ·  doi:10.2174/1574893613666180726163429
Effectively Identifying Compound-Protein Interactions by Learning from Positive and Unlabeled Examples
Effectively Identifying Compound-Protein Interactions by Learning from Positive and Unlabeled Examples
Zhanzhan Cheng, Shuigeng Zhou, Yang Wang, Hui Liu, Jihong Guan, Yi-Ping Phoebe Chen
IEEE/ACM Transactions on Computational Biology and Bioinformatics  ·  01 Nov 2018  ·  doi:10.1109/TCBB.2016.2570211
CPP: Towards comprehensive privacy preserving for query processing in information networks
CPP: Towards comprehensive privacy preserving for query processing in information networks
Chaobin Liu, Shuigeng Zhou, Haibo Hu, Yuzhe Tang, Jihong Guan, Yao Ma
Information Sciences  ·  01 Oct 2018  ·  doi:10.1016/j.ins.2018.08.010
An empirical study on the intra-urban goods movement patterns using logistics big data
An empirical study on the intra-urban goods movement patterns using logistics big data
Pengxiang Zhao, Xintao Liu, Wenzhong Shi, Tao Jia, Wengen Li, Min Chen
International Journal of Geographical Information Science  ·  20 Sep 2018  ·  doi:10.1080/13658816.2018.1520236
Link Prediction based on Quantum-Inspired Ant Colony Optimization
Link Prediction based on Quantum-Inspired Ant Colony Optimization
Zhiwei Cao, Yichao Zhang, Jihong Guan, Shuigeng Zhou
Scientific Reports  ·  06 Sep 2018  ·  doi:10.1038/s41598-018-31254-3
Group-sparse Modeling Drug-kinase Networks for Predicting Combinatorial Drug Sensitivity in Cancer Cells
Group-sparse Modeling Drug-kinase Networks for Predicting Combinatorial Drug Sensitivity in Cancer Cells
Hui Liu, Libo Luo, Zhanzhan Cheng, Jianjiang Sun, Jihong Guan, Jie Zheng, Shuigeng Zhou
Current Bioinformatics  ·  04 Sep 2018  ·  doi:10.2174/1574893613666180118104250
Towards efficiently supporting database as a service with QoS guarantees
Towards efficiently supporting database as a service with QoS guarantees
Yifeng Luo, Junshi Guo, Jiaye Zhu, Jihong Guan, Shuigeng Zhou
Journal of Systems and Software  ·  01 May 2018  ·  doi:10.1016/j.jss.2018.01.034
Measuring Conditional Independence by Independent Residuals: Theoretical Results and Application in Causal Discovery
Measuring Conditional Independence by Independent Residuals: Theoretical Results and Application in Causal Discovery
Hao Zhang, Shuigeng Zhou, Jihong Guan
Proceedings of the AAAI Conference on Artificial Intelligence  ·  25 Apr 2018  ·  doi:10.1609/aaai.v32i1.11555
Probabilistic Time-Constrained Paths Search over Uncertain Road Networks
Probabilistic Time-Constrained Paths Search over Uncertain Road Networks
Wengen Li, Jihong Guan, Xiang Lian, Shuigeng Zhou, Jiannong Cao
IEEE Transactions on Services Computing  ·  01 Mar 2018  ·  doi:10.1109/TSC.2016.2582692
CPredictor 4.0: effectively detecting protein complexes in weighted dynamic PPI networks
CPredictor 4.0: effectively detecting protein complexes in weighted dynamic PPI networks
Yunjia Shi, Heng Yao, Jihong Guan, Shuigeng Zhou
International Journal of Data Mining and Bioinformatics  ·  01 Jan 2018  ·  doi:10.1504/IJDMB.2018.094888
A Unified Framework for Predicting KPIs of On-Demand Transport Services
A Unified Framework for Predicting KPIs of On-Demand Transport Services
Jihong Guan, Weili Wang, Wengen Li, Shuigeng Zhou
IEEE Access  ·  01 Jan 2018  ·  doi:10.1109/ACCESS.2018.2846550

2017

CPredictor3.0: detecting protein complexes from PPI networks with expression data and functional annotations
CPredictor3.0: detecting protein complexes from PPI networks with expression data and functional annotations
Ying Xu, Jiaogen Zhou, Shuigeng Zhou, Jihong Guan
BMC Systems Biology  ·  01 Dec 2017  ·  doi:10.1186/s12918-017-0504-3
Divide-and-conquer Tournament on Social Networks
Divide-and-conquer Tournament on Social Networks
Jiasheng Wang, Yichao Zhang, Jihong Guan, Shuigeng Zhou
Scientific Reports  ·  14 Nov 2017  ·  doi:10.1038/s41598-017-15616-x
Coupled Sparse Matrix Factorization for Response Time Prediction in Logistics Services
Coupled Sparse Matrix Factorization for Response Time Prediction in Logistics Services
Yuqi Wang, Jiannong Cao, Lifang He, Wengen Li, Lichao Sun, Philip S. Yu
Proceedings of the 2017 ACM on Conference on Information and Knowledge Management  ·  06 Nov 2017  ·  doi:10.1145/3132847.3132948
Exploring traffic congestion correlation from multiple data sources
Exploring traffic congestion correlation from multiple data sources
Yuqi Wang, Jiannong Cao, Wengen Li, Tao Gu, Wenzhong Shi
Pervasive and Mobile Computing  ·  01 Oct 2017  ·  doi:10.1016/j.pmcj.2017.03.015
Fusing multiple protein-protein similarity networks to effectively predict lncRNA-protein interactions
Fusing multiple protein-protein similarity networks to effectively predict lncRNA-protein interactions
Xiaoxiong Zheng, Yang Wang, Kai Tian, Jiaogen Zhou, Jihong Guan, Libo Luo, Shuigeng Zhou
BMC Bioinformatics  ·  01 Oct 2017  ·  doi:10.1186/s12859-017-1819-1
An effective approach to detecting both small and large complexes from protein-protein interaction networks
An effective approach to detecting both small and large complexes from protein-protein interaction networks
Bin Xu, Yang Wang, Zewei Wang, Jiaogen Zhou, Shuigeng Zhou, Jihong Guan
BMC Bioinformatics  ·  01 Oct 2017  ·  doi:10.1186/s12859-017-1820-8
A new method for enhancer prediction based on deep belief network
A new method for enhancer prediction based on deep belief network
Hongda Bu, Yanglan Gan, Yang Wang, Shuigeng Zhou, Jihong Guan
BMC Bioinformatics  ·  01 Oct 2017  ·  doi:10.1186/s12859-017-1828-0
Efficient Retrieval of Bounded-Cost Informative Routes
Efficient Retrieval of Bounded-Cost Informative Routes
Wengen Li, Jiannong Cao, Jihong Guan, Man Lung Yiu, Shuigeng Zhou
IEEE Transactions on Knowledge and Data Engineering  ·  01 Oct 2017  ·  doi:10.1109/TKDE.2017.2721408
A New Method for Extracting the Hierarchical Organization of Networks
A New Method for Extracting the Hierarchical Organization of Networks
Weihua Zhan, Jihong Guan, Zhongzhi Zhang
International Journal of Information Technology & Decision Making  ·  01 Sep 2017  ·  doi:10.1142/S021962201450028X
A new hybrid method for learning bayesian networks: Separation and reunion
A new hybrid method for learning bayesian networks: Separation and reunion
Hui Liu, Shuigeng Zhou, Wai Lam, Jihong Guan
Knowledge-Based Systems  ·  01 Apr 2017  ·  doi:10.1016/j.knosys.2017.01.029
Selecting high-quality negative samples for effectively predicting protein-RNA interactions
Selecting high-quality negative samples for effectively predicting protein-RNA interactions
Zhanzhan Cheng, Kai Huang, Yang Wang, Hui Liu, Jihong Guan, Shuigeng Zhou
BMC Systems Biology  ·  01 Mar 2017  ·  doi:10.1186/s12918-017-0390-8
Causal Discovery Using Regression-Based Conditional Independence Tests
Causal Discovery Using Regression-Based Conditional Independence Tests
Hao Zhang, Shuigeng Zhou, Kun Zhang, Jihong Guan
Proceedings of the AAAI Conference on Artificial Intelligence  ·  12 Feb 2017  ·  doi:10.1609/aaai.v31i1.10698
iHMS: a database integrating human histone modification data across developmental stages and tissues
iHMS: a database integrating human histone modification data across developmental stages and tissues
Yanglan Gan, Han Tao, Jihong Guan, Shuigeng Zhou
BMC Bioinformatics  ·  11 Feb 2017  ·  doi:10.1186/s12859-017-1461-y
A Graph Matching Based Method for Dynamic Passenger-Centered Ridesharing
A Graph Matching Based Method for Dynamic Passenger-Centered Ridesharing
Jia Shi, Yifeng Luo, Shuigeng Zhou, Jihong Guan
Lecture Notes in Computer Science  ·  01 Jan 2017  ·  doi:10.1007/978-3-319-64468-4_4
Supporting Cost-Efficient Multi-tenant Database Services with Service Level Objectives (SLOs)
Supporting Cost-Efficient Multi-tenant Database Services with Service Level Objectives (SLOs)
Yifeng Luo, Junshi Guo, Jiaye Zhu, Jihong Guan, Shuigeng Zhou
Lecture Notes in Computer Science  ·  01 Jan 2017  ·  doi:10.1007/978-3-319-55753-3_37
DeepCluster: A General Clustering Framework Based on Deep Learning
DeepCluster: A General Clustering Framework Based on Deep Learning
Kai Tian, Shuigeng Zhou, Jihong Guan
Lecture Notes in Computer Science  ·  01 Jan 2017  ·  doi:10.1007/978-3-319-71246-8_49

2016

Side-chain dynamics analysis of KE07 series
Side-chain dynamics analysis of KE07 series
Xin Geng, Jiaogen Zhou, Jihong Guan
Computational Biology and Chemistry  ·  01 Dec 2016  ·  doi:10.1016/j.compbiolchem.2016.09.007
Screening lifespan-extending drugs in Caenorhabditis elegans via label propagation on drug-protein networks
Screening lifespan-extending drugs in Caenorhabditis elegans via label propagation on drug-protein networks
Hui Liu, Mengmeng Guo, Ting Xue, Jihong Guan, Libo Luo, Ziheng Zhuang
BMC Systems Biology  ·  01 Dec 2016  ·  doi:10.1186/s12918-016-0362-4
Inferring new indications for approved drugs via random walk on drug-disease heterogenous networks
Inferring new indications for approved drugs via random walk on drug-disease heterogenous networks
Hui Liu, Yinglong Song, Jihong Guan, Libo Luo, Ziheng Zhuang
BMC Bioinformatics  ·  01 Dec 2016  ·  doi:10.1186/s12859-016-1336-7
Dynamic epigenetic mode analysis using spatial temporal clustering
Dynamic epigenetic mode analysis using spatial temporal clustering
YangLan Gan, Han Tao, Guobing Zou, Cairong Yan, Jihong Guan
BMC Bioinformatics  ·  01 Dec 2016  ·  doi:10.1186/s12859-016-1331-z
Boosting compound-protein interaction prediction by deep learning
Boosting compound-protein interaction prediction by deep learning
Kai Tian, Mingyu Shao, Yang Wang, Jihong Guan, Shuigeng Zhou
Methods  ·  01 Nov 2016  ·  doi:10.1016/j.ymeth.2016.06.024
An integrative analysis of nucleosome occupancy and positioning using diverse sequence dependent properties
An integrative analysis of nucleosome occupancy and positioning using diverse sequence dependent properties
Yun Lu, Yanglan Gan, Jihong Guan, Shuigeng Zhou
Neurocomputing  ·  01 Sep 2016  ·  doi:10.1016/j.neucom.2015.11.107
Histone modification patterns in highly differentiation cells
Histone modification patterns in highly differentiation cells
Qiuyang Wu, Jihong Guan, Shuigeng Zhou
Neurocomputing  ·  01 Sep 2016  ·  doi:10.1016/j.neucom.2015.11.108
Mining Traffic Congestion Correlation between Road Segments on GPS Trajectories
Mining Traffic Congestion Correlation between Road Segments on GPS Trajectories
Yuqi Wang, Jiannong Cao, Wengen Li, Tao Gu
2016 IEEE International Conference on Smart Computing (SMARTCOMP)  ·  01 May 2016  ·  doi:10.1109/SMARTCOMP.2016.7501704
Knowledge diffusion in complex networks
Knowledge diffusion in complex networks
Yichao Zhang, Xing Li, M. A. Aziz‐alaoui, Cyrille Bertelle, Jihong Guan, Shuigeng Zhou
Concurrency and Computation: Practice and Experience  ·  24 Feb 2016  ·  doi:10.1002/cpe.3791
Exploiting Twitter Moods to Boost Financial Trend Prediction Based on Deep Network Models
Exploiting Twitter Moods to Boost Financial Trend Prediction Based on Deep Network Models
Yifu Huang, Kai Huang, Yang Wang, Hao Zhang, Jihong Guan, Shuigeng Zhou
Lecture Notes in Computer Science  ·  01 Jan 2016  ·  doi:10.1007/978-3-319-42297-8_42
Retrieving Routes of Interest Over Road Networks
Retrieving Routes of Interest Over Road Networks
Wengen Li, Jiannong Cao, Jihong Guan, Man Lung Yiu, Shuigeng Zhou
Lecture Notes in Computer Science  ·  01 Jan 2016  ·  doi:10.1007/978-3-319-39937-9_9

2015

Unfavorable Individuals in Social Gaming Networks
Unfavorable Individuals in Social Gaming Networks
Yichao Zhang, Guanrong Chen, Jihong Guan, Zhongzhi Zhang, Shuigeng Zhou
Scientific Reports  ·  09 Dec 2015  ·  doi:10.1038/srep17481
Effectively classifying short texts by structured sparse representation with dictionary filtering
Effectively classifying short texts by structured sparse representation with dictionary filtering
Longwen Gao, Shuigeng Zhou, Jihong Guan
Information Sciences  ·  01 Dec 2015  ·  doi:10.1016/j.ins.2015.06.033
CoGI: Towards Compressing Genomes as an Image
CoGI: Towards Compressing Genomes as an Image
Xiaojing Xie, Shuigeng Zhou, Jihong Guan
IEEE/ACM Transactions on Computational Biology and Bioinformatics  ·  01 Nov 2015  ·  doi:10.1109/TCBB.2015.2430331
DPNuc: Identifying Nucleosome Positions Based on the Dirichlet Process Mixture Model
DPNuc: Identifying Nucleosome Positions Based on the Dirichlet Process Mixture Model
Huidong Chen, Jihong Guan, Shuigeng Zhou
IEEE/ACM Transactions on Computational Biology and Bioinformatics  ·  01 Nov 2015  ·  doi:10.1109/TCBB.2015.2430350
Boosting compound-protein interaction prediction by deep learning
Boosting compound-protein interaction prediction by deep learning
Kai Tian, Mingyu Shao, Shuigeng Zhou, Jihong Guan
2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)  ·  01 Nov 2015  ·  doi:10.1109/BIBM.2015.7359651
Revisiting topological properties and models of protein–protein interaction networks from the perspective of dataset evolution
Revisiting topological properties and models of protein–protein interaction networks from the perspective of dataset evolution
Mingyu Shao, Shuigeng Zhou, Jihong Guan
IET Systems Biology  ·  01 Aug 2015  ·  doi:10.1049/iet-syb.2014.0053
A distributed inverse distance weighted interpolation algorithm based on the cloud computing platform of Hadoop and its implementation
A distributed inverse distance weighted interpolation algorithm based on the cloud computing platform of Hadoop and its implementation
Zhong Xu, Jihong Guan, Jiaogen Zhou
2015 12th International Conference on Fuzzy Systems and Knowledge Discovery (FSKD)  ·  01 Aug 2015  ·  doi:10.1109/FSKD.2015.7382331
Improving compound–protein interaction prediction by building up highly credible negative samples
Improving compound–protein interaction prediction by building up highly credible negative samples
Hui Liu, Jianjiang Sun, Jihong Guan, Jie Zheng, Shuigeng Zhou
Bioinformatics  ·  10 Jun 2015  ·  doi:10.1093/bioinformatics/btv256
Computationally predicting protein-RNA interactions using only positive and unlabeled examples
Computationally predicting protein-RNA interactions using only positive and unlabeled examples
Zhanzhan Cheng, Shuigeng Zhou, Jihong Guan
Journal of Bioinformatics and Computational Biology  ·  15 May 2015  ·  doi:10.1142/S021972001541005X
Determining average path length and average trapping time on generalized dual dendrimer
Determining average path length and average trapping time on generalized dual dendrimer
Ling Li, Jihong Guan
International Journal of Modern Physics B  ·  10 May 2015  ·  doi:10.1142/S0217979215500721
Towards a Secure Medium Access Control Protocol for Cluster-Based Underwater Wireless Sensor Networks
Towards a Secure Medium Access Control Protocol for Cluster-Based Underwater Wireless Sensor Networks
Ming Xu, Guangzhong Liu, Jihong Guan
International Journal of Distributed Sensor Networks  ·  01 May 2015  ·  doi:10.1155/2015/325474
Exploiting topic modeling to boost metagenomic reads binning
Exploiting topic modeling to boost metagenomic reads binning
Ruichang Zhang, Zhanzhan Cheng, Jihong Guan, Shuigeng Zhou
BMC Bioinformatics  ·  18 Mar 2015  ·  doi:10.1186/1471-2105-16-S5-S2
Efficiency-Controllable Random Walks on a Class of Recursive Scale-Free Trees with a Deep Trap
Efficiency-Controllable Random Walks on a Class of Recursive Scale-Free Trees with a Deep Trap
Ling Li, Ji-Hong Guan, Shui-Geng Zhou
Chinese Physics Letters  ·  01 Mar 2015  ·  doi:10.1088/0256-307X/32/3/030501
LAYER: A cost-efficient mechanism to support multi-tenant database as a service in cloud
LAYER: A cost-efficient mechanism to support multi-tenant database as a service in cloud
Yifeng Luo, Shuigeng Zhou, Jihong Guan
Journal of Systems and Software  ·  01 Mar 2015  ·  doi:10.1016/j.jss.2014.11.038
Similarity evaluation of DNA sequences based on frequent patterns and entropy
Similarity evaluation of DNA sequences based on frequent patterns and entropy
Xiaojing Xie, Jihong Guan, Shuigeng Zhou
BMC Genomics  ·  29 Jan 2015  ·  doi:10.1186/1471-2164-16-S3-S5
IKLTSA: An Incremental Kernel LTSA Method
IKLTSA: An Incremental Kernel LTSA Method
Chao Tan, Jihong Guan, Shuigeng Zhou
Lecture Notes in Computer Science  ·  01 Jan 2015  ·  doi:10.1007/978-3-319-21024-7_5
Boosting Financial Trend Prediction with Twitter Mood Based on Selective Hidden Markov Models
Boosting Financial Trend Prediction with Twitter Mood Based on Selective Hidden Markov Models
Yifu Huang, Shuigeng Zhou, Kai Huang, Jihong Guan
Lecture Notes in Computer Science  ·  01 Jan 2015  ·  doi:10.1007/978-3-319-18123-3_26

2014

Mean first passage time for random walk on dual structure of dendrimer
Mean first passage time for random walk on dual structure of dendrimer
Ling Li, Jihong Guan, Shuigeng Zhou
Physica A: Statistical Mechanics and its Applications  ·  01 Dec 2014  ·  doi:10.1016/j.physa.2014.08.029
Active learning for protein function prediction in protein–protein interaction networks
Active learning for protein function prediction in protein–protein interaction networks
Wei Xiong, Luyu Xie, Shuigeng Zhou, Jihong Guan
Neurocomputing  ·  01 Dec 2014  ·  doi:10.1016/j.neucom.2014.05.075
Histone modifications involved in cassette exon inclusions: a quantitative and interpretable analysis
Histone modifications involved in cassette exon inclusions: a quantitative and interpretable analysis
Hui Liu, Ting Jin, Jihong Guan, Shuigeng Zhou
BMC Genomics  ·  01 Dec 2014  ·  doi:10.1186/1471-2164-15-1148
Local Nash Equilibrium in Social Networks
Local Nash Equilibrium in Social Networks
Yichao Zhang, M. A. Aziz-Alaoui, Cyrille Bertelle, Jihong Guan
Scientific Reports  ·  29 Aug 2014  ·  doi:10.1038/srep06224
A Novel Image Registration Algorithm for Remote Sensing Under Affine Transformation
A Novel Image Registration Algorithm for Remote Sensing Under Affine Transformation
Zhili Song, Shuigeng Zhou, Jihong Guan
IEEE Transactions on Geoscience and Remote Sensing  ·  01 Aug 2014  ·  doi:10.1109/TGRS.2013.2285814
From Function to Interaction: A New Paradigm for Accurately Predicting Protein Complexes Based on Protein-to-Protein Interaction Networks
From Function to Interaction: A New Paradigm for Accurately Predicting Protein Complexes Based on Protein-to-Protein Interaction Networks
Bin Xu, Jihong Guan
IEEE/ACM Transactions on Computational Biology and Bioinformatics  ·  01 Jul 2014  ·  doi:10.1109/TCBB.2014.2306825
GR-tree: An efficient index structure for GML
GR-tree: An efficient index structure for GML
Weili Wang, Jihong Guan, Wengen Li, Long Zhang
2014 22nd International Conference on Geoinformatics  ·  01 Jun 2014  ·  doi:10.1109/GEOINFORMATICS.2014.6950837
PredHS: a web server for predicting protein–protein interaction hot spots by using structural neighborhood properties
PredHS: a web server for predicting protein–protein interaction hot spots by using structural neighborhood properties
Lei Deng, Qiangfeng Cliff Zhang, Zhigang Chen, Yang Meng, Jihong Guan, Shuigeng Zhou
Nucleic Acids Research  ·  22 May 2014  ·  doi:10.1093/nar/gku437
The centrality of cancer proteins in human protein-protein interaction network: a revisit
The centrality of cancer proteins in human protein-protein interaction network: a revisit
Wei Xiong, Luyu Xie, Shuigeng Zhou, Hui Liu, Jihong Guan
International Journal of Computational Biology and Drug Design  ·  01 Jan 2014  ·  doi:10.1504/IJCBDD.2014.061643
Identifying Cis-Regulatory Elements and Modules Using Conditional Random Fields
Identifying Cis-Regulatory Elements and Modules Using Conditional Random Fields
Yanglan Gan, Jihong Guan, Shuigeng Zhou, Weixiong Zhang
IEEE/ACM Transactions on Computational Biology and Bioinformatics  ·  01 Jan 2014  ·  doi:10.1109/TCBB.2013.131
A New Unsupervised Binning Approach for Metagenomic Sequences Based on N-grams and Automatic Feature Weighting
A New Unsupervised Binning Approach for Metagenomic Sequences Based on N-grams and Automatic Feature Weighting
Ruiqi Liao, Ruichang Zhang, Jihong Guan, Shuigeng Zhou
IEEE/ACM Transactions on Computational Biology and Bioinformatics  ·  01 Jan 2014  ·  doi:10.1109/TCBB.2013.137
Efficiently Evaluating Range-Constrained Spatial Keyword Query on Road Networks
Efficiently Evaluating Range-Constrained Spatial Keyword Query on Road Networks
Wengen Li, Jihong Guan, Shuigeng Zhou
Lecture Notes in Computer Science  ·  01 Jan 2014  ·  doi:10.1007/978-3-662-43984-5_21
Distributed Spatial Keyword Querying on Road Networks
Distributed Spatial Keyword Querying on Road Networks
Siqiang Luo, Yifeng Luo, Shuigeng Zhou, Gao Cong, Jihong Guan
OpenProceedings.org  ·  01 Jan 2014  ·  doi:10.5441/002/edbt.2014.23
Calculating the Crossing Probability on the Square Tessellation of a Connection Game with Random Move Order: The Algorithm and Its Complexity
Calculating the Crossing Probability on the Square Tessellation of a Connection Game with Random Move Order: The Algorithm and Its Complexity
Yi Yang, Shuigeng Zhou, Jihong Guan
Lecture Notes in Computer Science  ·  01 Jan 2014  ·  doi:10.1007/978-3-319-08016-1_26

2013

Boosting Prediction Performance of Protein–Protein Interaction Hot Spots by Using Structural Neighborhood Properties
Boosting Prediction Performance of Protein–Protein Interaction Hot Spots by Using Structural Neighborhood Properties
Lei Deng, Jihong Guan, Xiaoming Wei, Yuan Yi, Qiangfeng Cliff Zhang, Shuigeng Zhou
Journal of Computational Biology  ·  01 Nov 2013  ·  doi:10.1089/cmb.2013.0083
A New and Effective Approach to GML Documents Compression
A New and Effective Approach to GML Documents Compression
Q. Wei, J. Guan, S. Zhou, X. Wang
The Computer Journal  ·  06 Oct 2013  ·  doi:10.1093/comjnl/bxt106
WHEN CLOUD COMPUTING MEETS BIOINFORMATICS: A REVIEW
WHEN CLOUD COMPUTING MEETS BIOINFORMATICS: A REVIEW
SHUIGENG ZHOU, RUIQI LIAO, JIHONG GUAN
Journal of Bioinformatics and Computational Biology  ·  01 Oct 2013  ·  doi:10.1142/S0219720013300025
A comparative evaluation on prediction methods of nucleosome positioning
A comparative evaluation on prediction methods of nucleosome positioning
H. Liu, R. Zhang, W. Xiong, J. Guan, Z. Zhuang, S. Zhou
Briefings in Bioinformatics  ·  10 Sep 2013  ·  doi:10.1093/bib/bbt062
Protein function prediction by collective classification with explicit and implicit edges in protein-protein interaction networks
Protein function prediction by collective classification with explicit and implicit edges in protein-protein interaction networks
Wei Xiong, Hui Liu, Jihong Guan, Shuigeng Zhou
BMC Bioinformatics  ·  01 Sep 2013  ·  doi:10.1186/1471-2105-14-S12-S4
CloudNMF: A MapReduce Implementation of Nonnegative Matrix Factorization for Large-Scale Biological Datasets
CloudNMF: A MapReduce Implementation of Nonnegative Matrix Factorization for Large-Scale Biological Datasets
Ruiqi Liao, Yifan Zhang, Jihong Guan, Shuigeng Zhou
Genomics, Proteomics & Bioinformatics  ·  08 Aug 2013  ·  doi:10.1016/j.gpb.2013.06.001
Scalable continual top-k keyword search in relational databases
Scalable continual top-k keyword search in relational databases
Yanwei Xu, Jihong Guan, Fengrong Li, Shuigeng Zhou
Data & Knowledge Engineering  ·  01 Jul 2013  ·  doi:10.1016/j.datak.2013.03.004
Choosing appropriate models for protein–protein interaction networks: a comparison study
Choosing appropriate models for protein–protein interaction networks: a comparison study
Mingyu Shao, Yi Yang, Jihong Guan, Shuigeng Zhou
Briefings in Bioinformatics  ·  19 Mar 2013  ·  doi:10.1093/bib/bbt014
Rumor evolution in social networks
Rumor evolution in social networks
Yichao Zhang, Shi Zhou, Zhongzhi Zhang, Jihong Guan, Shuigeng Zhou
Physical Review E  ·  15 Mar 2013  ·  doi:10.1103/PhysRevE.87.032133
A RAMCloud Storage System based on HDFS: Architecture, implementation and evaluation
A RAMCloud Storage System based on HDFS: Architecture, implementation and evaluation
Yifeng Luo, Siqiang Luo, Jihong Guan, Shuigeng Zhou
Journal of Systems and Software  ·  01 Mar 2013  ·  doi:10.1016/j.jss.2012.11.025
Identifying Mammalian MicroRNA Targets Based on Supervised Distance Metric Learning
Identifying Mammalian MicroRNA Targets Based on Supervised Distance Metric Learning
Hui Liu, Shuigene Zhou, Jihong Guan
IEEE Journal of Biomedical and Health Informatics  ·  01 Mar 2013  ·  doi:10.1109/TITB.2012.2229286

2012

Automatically clustering large-scale miRNA sequences: methods and experiments
Automatically clustering large-scale miRNA sequences: methods and experiments
Linxia Wan, Jiandong Ding, Ting Jin, Jihong Guan, Shuigeng Zhou
BMC Genomics  ·  01 Dec 2012  ·  doi:10.1186/1471-2164-13-S8-S15
A semi-supervised boosting SVM for predicting hot spots at protein-protein Interfaces
A semi-supervised boosting SVM for predicting hot spots at protein-protein Interfaces
Bin Xu, Xiaoming Wei, Lei Deng, Jihong Guan, Shuigeng Zhou
BMC Systems Biology  ·  01 Dec 2012  ·  doi:10.1186/1752-0509-6-S2-S6
Finding MicroRNA Targets in Plants: Current Status and Perspectives
Finding MicroRNA Targets in Plants: Current Status and Perspectives
Jiandong Ding, Shuigeng Zhou, Jihong Guan
Genomics, Proteomics & Bioinformatics  ·  01 Oct 2012  ·  doi:10.1016/j.gpb.2012.09.003
Effectively predicting protein functions by collective classification &#x2014; An extended abstract
Effectively predicting protein functions by collective classification &#x2014; An extended abstract
Wei Xiong, Hui Liu, Jihong Guan, Shuigeng Zhou
2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops  ·  01 Oct 2012  ·  doi:10.1109/BIBMW.2012.6470212
A comparison study on protein-protein interaction network models
A comparison study on protein-protein interaction network models
Mingyu Shao, Yi Yang, Jihong Guan, Shuigeng Zhou
2012 IEEE International Conference on Bioinformatics and Biomedicine  ·  01 Oct 2012  ·  doi:10.1109/BIBM.2012.6392732
Detecting potential collusive cliques in futures markets based on trading behaviors from real data
Detecting potential collusive cliques in futures markets based on trading behaviors from real data
Junjie Wang, Shuigeng Zhou, Jihong Guan
Neurocomputing  ·  01 Sep 2012  ·  doi:10.1016/j.neucom.2011.11.022
Effective clustering of microRNA sequences by N-grams and feature weighting
Effective clustering of microRNA sequences by N-grams and feature weighting
Yuan Yi, Jihong Guan, Shuigeng Zhou
2012 IEEE 6th International Conference on Systems Biology (ISB)  ·  01 Aug 2012  ·  doi:10.1109/ISB.2012.6314137
DISKs
DISKs
Siqiang Luo, Yifeng Luo, Shuigeng Zhou, Gao Cong, Jihong Guan
Proceedings of the VLDB Endowment  ·  01 Aug 2012  ·  doi:10.14778/2367502.2367549
Genome-wide search for miRNA-target interactions in Arabidopsis thaliana with an integrated approach
Genome-wide search for miRNA-target interactions in Arabidopsis thaliana with an integrated approach
Jiandong Ding, Danqing Li, Uwe Ohler, Jihong Guan, Shuigeng Zhou
BMC Genomics  ·  01 Jun 2012  ·  doi:10.1186/1471-2164-13-S3-S3
miRFANs: an integrated database for Arabidopsis thalianamicroRNA function annotations
miRFANs: an integrated database for Arabidopsis thalianamicroRNA function annotations
Hui Liu, Ting Jin, Ruiqi Liao, Linxia Wan, Bin Xu, Shuigeng Zhou, Jihong Guan
BMC Plant Biology  ·  14 May 2012  ·  doi:10.1186/1471-2229-12-68
Structural features based genome-wide characterization and prediction of nucleosome organization
Structural features based genome-wide characterization and prediction of nucleosome organization
Yanglan Gan, Jihong Guan, Shuigeng Zhou, Weixiong Zhang
BMC Bioinformatics  ·  26 Mar 2012  ·  doi:10.1186/1471-2105-13-49
A comparison study on feature selection of DNA structural properties for promoter prediction
A comparison study on feature selection of DNA structural properties for promoter prediction
Yanglan Gan, Jihong Guan, Shuigeng Zhou
BMC Bioinformatics  ·  07 Jan 2012  ·  doi:10.1186/1471-2105-13-4
Traffic Fluctuations on Weighted Networks
Traffic Fluctuations on Weighted Networks
Yichao Zhang, Shi Zhou, Zhongzhi Zhang, Jihong Guan, Shuigeng Zhou, Guanrong Chen
IEEE Circuits and Systems Magazine  ·  01 Jan 2012  ·  doi:10.1109/MCAS.2011.2181075
An improved genetic algorithm for statistical potential function design and protein structure prediction
An improved genetic algorithm for statistical potential function design and protein structure prediction
Xin Geng, Jihong Guan, Qiwen Dong, Shuigeng Zhou
International Journal of Data Mining and Bioinformatics  ·  01 Jan 2012  ·  doi:10.1504/ijdmb.2012.048174

2011

imiRTP: An Integrated Method to Identifying miRNA-target Interactions in Arabidopsis thaliana
imiRTP: An Integrated Method to Identifying miRNA-target Interactions in Arabidopsis thaliana
Jiandong Ding, Shusi Yu, Uwe Ohler, Jihong Guan, Shuigeng Zhou
2011 IEEE International Conference on Bioinformatics and Biomedicine  ·  01 Nov 2011  ·  doi:10.1109/BIBM.2011.13
SemiHS: An Iterative Semi-Supervised Approach for Predicting Proteinprotein Interaction Hot Spots
SemiHS: An Iterative Semi-Supervised Approach for Predicting Proteinprotein Interaction Hot Spots
Ji-Hong Guan, Qi-Wen Dong, Shui-Geng Zhou, Lei Deng
Protein & Peptide Letters  ·  01 Sep 2011  ·  doi:10.2174/092986611796011419
Enhancing Routing Robustness of Unstructured Peer-to-Peer Networks Using Mobile Agents
Enhancing Routing Robustness of Unstructured Peer-to-Peer Networks Using Mobile Agents
Ming Xu, Shuigeng Zhou, Jihong Guan
Journal of Network and Systems Management  ·  23 Jul 2011  ·  doi:10.1007/s10922-011-9203-3
Evolutionary method for finding communities in bipartite networks
Evolutionary method for finding communities in bipartite networks
Weihua Zhan, Zhongzhi Zhang, Jihong Guan, Shuigeng Zhou
Physical Review E  ·  30 Jun 2011  ·  doi:10.1103/PhysRevE.83.066120
miRFam: an effective automatic miRNA classification method based on n-grams and a multiclass SVM
miRFam: an effective automatic miRNA classification method based on n-grams and a multiclass SVM
Jiandong Ding, Shuigeng Zhou, Jihong Guan
BMC Bioinformatics  ·  28 May 2011  ·  doi:10.1186/1471-2105-12-216
A new and effective hierarchical overlay structure for Peer-to-Peer networks
A new and effective hierarchical overlay structure for Peer-to-Peer networks
Ming Xu, Shuigeng Zhou, Jihong Guan
Computer Communications  ·  01 May 2011  ·  doi:10.1016/j.comcom.2010.10.005
Epidemic spreading with nonlinear infectivity in weighted scale-free networks
Epidemic spreading with nonlinear infectivity in weighted scale-free networks
Xiangwei Chu, Zhongzhi Zhang, Jihong Guan, Shuigeng Zhou
Physica A: Statistical Mechanics and its Applications  ·  01 Feb 2011  ·  doi:10.1016/j.physa.2010.09.038
Characteristics of real futures trading networks
Characteristics of real futures trading networks
Junjie Wang, Shuigeng Zhou, Jihong Guan
Physica A: Statistical Mechanics and its Applications  ·  01 Jan 2011  ·  doi:10.1016/j.physa.2010.09.027
Towards Efficient Subgraph Search in Cloud Computing Environments
Towards Efficient Subgraph Search in Cloud Computing Environments
Yifeng Luo, Jihong Guan, Shuigeng Zhou
Lecture Notes in Computer Science  ·  01 Jan 2011  ·  doi:10.1007/978-3-642-20244-5_2
Adapting Skyline Computation to the MapReduce Framework: Algorithms and Experiments
Adapting Skyline Computation to the MapReduce Framework: Algorithms and Experiments
Boliang Zhang, Shuigeng Zhou, Jihong Guan
Lecture Notes in Computer Science  ·  01 Jan 2011  ·  doi:10.1007/978-3-642-20244-5_39

2010

MiRenSVM: towards better prediction of microRNA precursors using an ensemble SVM classifier with multi-loop features
MiRenSVM: towards better prediction of microRNA precursors using an ensemble SVM classifier with multi-loop features
Jiandong Ding, Shuigeng Zhou, Jihong Guan
BMC Bioinformatics  ·  01 Dec 2010  ·  doi:10.1186/1471-2105-11-S11-S11
LESSON: A system for lecture notes searching and sharing over Internet
LESSON: A system for lecture notes searching and sharing over Internet
Shuigeng Zhou, Ming Xu, Jihong Guan
Journal of Systems and Software  ·  01 Oct 2010  ·  doi:10.1016/j.jss.2010.04.069
Deterministic weighted scale-free small-world networks
Deterministic weighted scale-free small-world networks
Yichao Zhang, Zhongzhi Zhang, Shuigeng Zhou, Jihong Guan
Physica A: Statistical Mechanics and its Applications  ·  01 Aug 2010  ·  doi:10.1016/j.physa.2010.04.003
Gene Ontology-Based Protein Function Prediction by Using Sequence Composition Information
Gene Ontology-Based Protein Function Prediction by Using Sequence Composition Information
Qiwen Dong, Shuigeng Zhou, Lei Deng, Jihong Guan
Protein & Peptide Letters  ·  01 Jun 2010  ·  doi:10.2174/092986610791190336
A path-traceable query routing mechanism for search in unstructured peer-to-peer networks
A path-traceable query routing mechanism for search in unstructured peer-to-peer networks
Ming Xu, Shuigeng Zhou, Jihong Guan, Xiaohua Hu
Journal of Network and Computer Applications  ·  01 Mar 2010  ·  doi:10.1016/j.jnca.2009.11.003
Detecting microarray data supported microRNA-mRNA interactions
Detecting microarray data supported microRNA-mRNA interactions
Hui Liu, Shuigeng Zhou, Jihong Guan
International Journal of Data Mining and Bioinformatics  ·  01 Jan 2010  ·  doi:10.1504/ijdmb.2010.037545

2009

Prediction of protein-protein interaction sites using an ensemble method
Prediction of protein-protein interaction sites using an ensemble method
Lei Deng, Jihong Guan, Qiwen Dong, Shuigeng Zhou
BMC Bioinformatics  ·  01 Dec 2009  ·  doi:10.1186/1471-2105-10-426
A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation
A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation
Qiwen Dong, Shuigeng Zhou, Jihong Guan
Bioinformatics  ·  25 Aug 2009  ·  doi:10.1093/bioinformatics/btp500
A pattern-based nearest neighbor search approach for promoter prediction using DNA structural profiles
A pattern-based nearest neighbor search approach for promoter prediction using DNA structural profiles
Yanglan Gan, Jihong Guan, Shuigeng Zhou
Bioinformatics  ·  10 Jun 2009  ·  doi:10.1093/bioinformatics/btp359
Empirical Probability Functions Derived from Dihedral Angles for Protein Structure Prediction
Empirical Probability Functions Derived from Dihedral Angles for Protein Structure Prediction
Qiwen Dong, Xin Geng, Shuigeng Zhou, Jihong Guan
2009 Ninth IEEE International Conference on Bioinformatics and BioEngineering  ·  01 Jun 2009  ·  doi:10.1109/BIBE.2009.55
Different thresholds of bond percolation in scale-free networks with identical degree sequence
Different thresholds of bond percolation in scale-free networks with identical degree sequence
Zhongzhi Zhang, Shuigeng Zhou, Tao Zou, Lichao Chen, Jihong Guan
Physical Review E  ·  13 Mar 2009  ·  doi:10.1103/PhysRevE.79.031110
Influences of degree inhomogeneity on average path length and random walks in disassortative scale-free networks
Influences of degree inhomogeneity on average path length and random walks in disassortative scale-free networks
Zhongzhi Zhang, Yichao Zhang, Shuigeng Zhou, Ming Yin, Jihong Guan
Journal of Mathematical Physics  ·  01 Mar 2009  ·  doi:10.1063/1.3094757
Exact solution for mean first-passage time on a pseudofractal scale-free web
Exact solution for mean first-passage time on a pseudofractal scale-free web
Zhongzhi Zhang, Yi Qi, Shuigeng Zhou, Wenlei Xie, Jihong Guan
Physical Review E  ·  25 Feb 2009  ·  doi:10.1103/PhysRevE.79.021127
The rigorous solution for the average distance of a Sierpinski network
The rigorous solution for the average distance of a Sierpinski network
Zhongzhi Zhang, Lichao Chen, Lujun Fang, Shuigeng Zhou, Yichao Zhang, Jihong Guan
Journal of Statistical Mechanics: Theory and Experiment  ·  12 Feb 2009  ·  doi:10.1088/1742-5468/2009/02/P02034

2008

Random Sierpinski network with scale-free small-world and modular structure
Random Sierpinski network with scale-free small-world and modular structure
Zhongzhi Zhang, Shuigeng Zhou, Zhan Su, Tao Zou, Jihong Guan
The European Physical Journal B  ·  11 Aug 2008  ·  doi:10.1140/epjb/e2008-00305-8
Transition from fractal to non-fractal scalings in growing scale-free networks
Transition from fractal to non-fractal scalings in growing scale-free networks
Zhongzhi Zhang, Shuigeng Zhou, Lichao Chen, Jihong Guan
The European Physical Journal B  ·  01 Jul 2008  ·  doi:10.1140/epjb/e2008-00299-1
Towards effective document clustering: A constrained K-means based approach
Towards effective document clustering: A constrained K-means based approach
Guobiao Hu, Shuigeng Zhou, Jihong Guan, Xiaohua Hu
Information Processing & Management  ·  01 Jul 2008  ·  doi:10.1016/j.ipm.2008.03.001
An Effective GML Documents Compressor
An Effective GML Documents Compressor
J. GUAN, S. ZHOU, Y. CHEN
IEICE Transactions on Information and Systems  ·  01 Jul 2008  ·  doi:10.1093/ietisy/e91-d.7.1982
Topologies and Laplacian spectra of a deterministic uniform recursive tree
Topologies and Laplacian spectra of a deterministic uniform recursive tree
Zhongzhi Zhang, Shuigeng Zhou, Yi Qi, Jihong Guan
The European Physical Journal B  ·  01 Jun 2008  ·  doi:10.1140/epjb/e2008-00262-2
Degree and component size distributions in the generalized uniform recursive tree
Degree and component size distributions in the generalized uniform recursive tree
Zhongzhi Zhang, Shuigeng Zhou, Shanghong Zhao, Jihong Guan
Journal of Physics A: Mathematical and Theoretical  ·  18 Apr 2008  ·  doi:10.1088/1751-8113/41/18/185101
Analytical solution of average path length for Apollonian networks
Analytical solution of average path length for Apollonian networks
Zhongzhi Zhang, Lichao Chen, Shuigeng Zhou, Lujun Fang, Jihong Guan, Tao Zou
Physical Review E  ·  16 Jan 2008  ·  doi:10.1103/PhysRevE.77.017102

2007

Constraints-preserving GML storage in object-relational databases
Constraints-preserving GML storage in object-relational databases
Fubao Zhu, Jihong Guan, Shuigeng Zhou
Proceedings of the 15th annual ACM international symposium on Advances in geographic information systems  ·  07 Nov 2007  ·  doi:10.1145/1341012.1341074
Incompatibility networks as models of scale-free small-world graphs
Incompatibility networks as models of scale-free small-world graphs
Zhongzhi Zhang, Shuigeng Zhou, Tao Zou, Lichao Chen, Jihong Guan
The European Physical Journal B  ·  01 Nov 2007  ·  doi:10.1140/epjb/e2007-00344-7
Maximal planar scale-free Sierpinski networks with small-world effect and power law strength-degree correlation
Maximal planar scale-free Sierpinski networks with small-world effect and power law strength-degree correlation
Zhongzhi Zhang, Shuigeng Zhou, Lujun Fang, Jihong Guan, Yichao Zhang
Europhysics Letters (EPL)  ·  16 Jul 2007  ·  doi:10.1209/0295-5075/79/38007
Local-world evolving networks with tunable clustering
Local-world evolving networks with tunable clustering
Zhongzhi Zhang, Lili Rong, Bing Wang, Shuigeng Zhou, Jihong Guan
Physica A: Statistical Mechanics and its Applications  ·  01 Jul 2007  ·  doi:10.1016/j.physa.2007.02.045
GPress: Towards Effective GML Documents Compresssion
GPress: Towards Effective GML Documents Compresssion
Jihong Guan, Shuigeng Zhou
2007 IEEE 23rd International Conference on Data Engineering  ·  01 Jan 2007  ·  doi:10.1109/ICDE.2007.369039

Towards Energy-Efficient Skyline Monitoring in Wireless Sensor Networks
Towards Energy-Efficient Skyline Monitoring in Wireless Sensor Networks
Hekang Chen, Shuigeng Zhou, Jihong Guan
Lecture Notes in Computer Science  ·  [no date info]  ·  doi:10.1007/978-3-540-69830-2_7